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Gene
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Cofit
Protein
Homologs
Top cofit genes for GFF1486 from
Variovorax sp. SCN45
Tetrapartite efflux system, inner membrane component FusBC-like
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6126
putative membrane protein
0.44
0.57
2
GFF1039
Far-related protein
no
0.55
3
GFF870
TonB-dependent receptor
no
0.54
4
GFF3983
ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.54
5
GFF4101
N-methylhydantoinase B (EC 3.5.2.14)
no
0.52
6
GFF1591
FIG066100: Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
no
0.52
7
GFF5878
16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)
no
0.52
8
GFF189
Negative transcriptional regulator
no
0.51
9
GFF6581
Coupling protein VirD4, ATPase required for T-DNA transfer
no
0.50
10
GFF6820
hypothetical protein
no
0.50
11
GFF924
hypothetical protein
no
0.50
12
GFF5388
Two-component response regulatory protein BP2547
no
0.50
13
GFF313
FIG027190: Putative transmembrane protein
no
0.49
14
GFF4713
Uncharacterized protein YhiN
no
0.49
15
GFF5897
hypothetical protein
no
0.49
16
GFF6385
Mll4878 protein
no
0.49
17
GFF2899
no description
no
0.48
18
GFF2033
no description
no
0.48
19
GFF5621
ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.47
20
GFF499
hypothetical protein
no
0.47
Or look for
negative cofitness