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  • Top cofit genes for GFF1462 from Variovorax sp. SCN45

    L-carnitine dehydratase/bile acid-inducible protein F
    SEED: L-carnitine dehydratase/bile acid-inducible protein F

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6304 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) no 0.55
    2 GFF5094 BUG/TctC family periplasmic protein no 0.55
    3 GFF1753 LysR family transcriptional regulator lrhA no 0.47
    4 GFF2491 Threonine-synthase-like protein 3 no 0.46
    5 GFF6635 FIG00441227: hypothetical protein no 0.45
    6 GFF6044 FIG00933533: hypothetical protein no 0.45
    7 GFF4108 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.44
    8 GFF3647 Cytochrome b no 0.44
    9 GFF6347 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination no 0.44
    10 GFF7084 Mobile element protein no 0.44
    11 GFF3399 Benzoate--CoA ligase (EC 6.2.1.25) 0.45 0.42
    12 GFF2415 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) no 0.42
    13 GFF6536 protein of unknown function DUF1345 no 0.42
    14 GFF3765 no description no 0.42
    15 GFF6024 Pyrophosphatase, MutT/nudix family (EC 3.6.1.-) no 0.42
    16 GFF6215 no description no 0.41
    17 GFF3479 no description no 0.41
    18 GFF959 Phage holin no 0.40
    19 GFF3730 Integral membrane protein no 0.40
    20 GFF6973 Mobile element protein no 0.40

    Or look for negative cofitness