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  • Top cofit genes for PS417_00725 from Pseudomonas simiae WCS417

    RND transporter
    SEED: Outer membrane component of tripartite multidrug resistance system

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_00710 fusaric acid resistance protein 0.93 0.72
    2 PS417_25960 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) 0.25 0.68
    3 PS417_17395 MFS transporter 0.95 0.59
    4 PS417_22065 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) no 0.56
    5 PS417_00720 membrane protein 0.87 0.56
    6 PS417_00715 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) 0.87 0.55
    7 PS417_24810 aldehyde dehydrogenase 0.23 0.48
    8 PS417_17390 DSBA oxidoreductase 0.95 0.44
    9 PS417_24805 Fis family transcriptional regulator 0.23 0.43
    10 PS417_21010 ribonuclease activity regulator protein RraA 0.25 0.40
    11 PS417_06060 phosphoenolpyruvate carboxylase no 0.38
    12 PS417_11700 ligand-gated channel no 0.32
    13 PS417_00705 MarR family transcriptional regulator 0.39 0.32
    14 PS417_07270 LysR family transcriptional regulator 0.40 0.31
    15 PS417_07710 membrane protein no 0.29
    16 PS417_04735 LysR family transcriptional regulator no 0.29
    17 PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) 0.96 0.29
    18 PS417_07510 aspartyl beta-hydroxylase no 0.29
    19 PS417_16525 isocitrate dehydrogenase no 0.29
    20 PS417_01265 CbbBc protein no 0.28

    Or look for negative cofitness