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  • Top cofit genes for PS417_07315 from Pseudomonas simiae WCS417

    LysR family transcriptional regulator
    SEED: LysR-family transcriptional regulator clustered with PA0057

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_16560 GNAT family acetyltransferase no 0.25
    2 PS417_06780 TetR family transcriptional regulator 0.18 0.25
    3 PS417_12935 RNA polymerase sigma factor 0.16 0.23
    4 PS417_06965 cysteine methyltransferase 0.14 0.20
    5 PS417_08510 LysR family transcriptional regulator 0.51 0.19
    6 PS417_20180 agmatinase 0.23 0.19
    7 PS417_16480 recombination factor protein RarA no 0.19
    8 PS417_03790 pilus assembly protein PilW 0.64 0.18
    9 PS417_25165 chitin-binding protein no 0.18
    10 PS417_24185 hypothetical protein no 0.18
    11 PS417_20030 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase no 0.18
    12 PS417_13985 dehydrogenase no 0.18
    13 PS417_10925 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) no 0.17
    14 PS417_11850 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) 0.52 0.17
    15 PS417_25305 peptide ABC transporter permease no 0.17
    16 PS417_26900 L-cystine transporter tcyP no 0.17
    17 PS417_14160 hypothetical protein no 0.17
    18 PS417_06655 class V aminotransferase no 0.16
    19 PS417_14035 lactoylglutathione lyase 0.48 0.16
    20 PS417_17875 FAD-dependent oxidoreductase no 0.16

    Or look for negative cofitness