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  • Top cofit genes for GFF1436 from Variovorax sp. SCN45

    CaiB/BaiF family protein
    SEED: L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7311 Putative transmembrane lipoprotein no 0.60
    2 GFF2188 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) no 0.59
    3 GFF1864 Transcriptional regulator, LysR family no 0.59
    4 GFF2395 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.55
    5 GFF4964 Sulfate permease no 0.55
    6 GFF3956 no description no 0.52
    7 GFF3676 Outer membrane protein romA no 0.52
    8 GFF3081 no description no 0.51
    9 GFF3181 FIG005069: Hypothetical protein no 0.51
    10 GFF5524 Predicted transcriptional regulator no 0.51
    11 GFF3967 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) no 0.51
    12 GFF1528 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB no 0.50
    13 GFF1471 Uncharacterized MFS-type transporter no 0.50
    14 GFF3008 hypothetical protein no 0.50
    15 GFF1935 GNAT family acetyltransferase PA5433 no 0.50
    16 GFF6579 Conjugative transfer protein TrbB no 0.50
    17 GFF1473 Amidase family protein BBta_1912 no 0.50
    18 GFF107 General secretion pathway protein K no 0.48
    19 GFF1755 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.48
    20 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) no 0.48

    Or look for negative cofitness