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  • Top cofit genes for GFF1424 from Variovorax sp. SCN45

    Phenylacetate ABC transporter, permease protein 2
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1332 no description no 0.63
    2 GFF4469 Cell division protein FtsA no 0.59
    3 GFF2385 no description no 0.58
    4 GFF3598 TRAP-type C4-dicarboxylate transport system, periplasmic component no 0.58
    5 GFF6459 Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB) no 0.58
    6 GFF1788 hypothetical protein no 0.57
    7 GFF4917 no description no 0.56
    8 GFF3451 no description no 0.56
    9 GFF6298 Transcriptional regulator, LysR family no 0.56
    10 GFF2410 Intracellular protease no 0.56
    11 GFF2185 Acetyltransferase, GNAT family no 0.55
    12 GFF4978 Acyl-CoA thioesterase II (EC 3.1.2.-) no 0.53
    13 GFF4460 Phosphatidate cytidylyltransferase (EC 2.7.7.41) 0.25 0.53
    14 GFF4648 Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system 0.28 0.53
    15 GFF267 no description no 0.53
    16 GFF4187 hypothetical protein no 0.53
    17 GFF4500 FIG002283: Isochorismatase family protein no 0.52
    18 GFF89 hypothetical protein no 0.51
    19 GFF793 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system no 0.51
    20 GFF5929 Mll2356 protein no 0.51

    Or look for negative cofitness