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  • Top cofit genes for GFF1423 from Variovorax sp. SCN45

    Phenylacetate ABC transporter, permease protein 1
    SEED: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF674 no description no 0.65
    2 GFF173 Hexuronate utilization operon transcriptional repressor ExuR no 0.63
    3 GFF4765 ADP-ribose pyrophosphatase (EC 3.6.1.13) no 0.59
    4 GFF6995 Flagellar M-ring protein FliF no 0.58
    5 GFF6163 hypothetical protein no 0.58
    6 GFF3574 hypothetical protein no 0.55
    7 GFF1010 hypothetical protein no 0.55
    8 GFF3203 no description no 0.55
    9 GFF7214 Peptidase M20D, amidohydrolase no 0.54
    10 GFF2424 ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) no 0.54
    11 GFF2415 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) no 0.54
    12 GFF5912 Two-component transcriptional response regulator, LuxR family, but with unusual receiver domain no 0.53
    13 GFF871 Vitamin B12 ABC transporter, substrate-binding protein BtuF no 0.52
    14 GFF629 hypothetical protein no 0.52
    15 GFF3145 Two-component system response regulator QseB no 0.52
    16 GFF1713 no description no 0.52
    17 GFF4072 hypothetical protein no 0.52
    18 GFF6542 Transcriptional regulator, AcrR family no 0.52
    19 GFF4843 Conjugative transfer protein TrbF no 0.50
    20 GFF905 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) no 0.50

    Or look for negative cofitness