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  • Top cofit genes for GFF140 from Variovorax sp. SCN45

    Putative transport protein
    SEED: Cation transport protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1890 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) no 0.56
    2 GFF1530 Nucleoside-diphosphate-sugar epimerases 0.26 0.55
    3 GFF4332 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.54
    4 GFF7184 hypothetical protein no 0.53
    5 GFF1878 Bll6165 protein no 0.52
    6 GFF2171 MBL-fold metallohydrolase SPO0683 no 0.52
    7 GFF1250 Alkanesulfonate ABC transporter substrate-binding protein SsuA no 0.51
    8 GFF92 KEGG: general secretion pathway protein I no 0.50
    9 GFF4143 Dihydrofolate reductase (EC 1.5.1.3) 0.24 0.48
    10 GFF4093 no description no 0.48
    11 GFF307 FIG143263: Glycosyl transferase no 0.48
    12 GFF2230 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) no 0.48
    13 GFF4551 Putative preQ0 transporter YhhQ no 0.47
    14 GFF1831 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 no 0.47
    15 GFF6460 Sensor protein BasS/PmrB (activates BasR/PmrA) no 0.46
    16 GFF3389 Glycosyl transferases, related to UDP-glucuronosyltransferase 0.34 0.46
    17 GFF2713 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.46
    18 GFF7321 Sensor histidine kinase GlrK no 0.46
    19 GFF4144 Prolyl endopeptidase (EC 3.4.21.26) no 0.45
    20 GFF6444 no description no 0.45

    Or look for negative cofitness