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  • Top cofit genes for GFF1398 from Variovorax sp. SCN45

    Transcriptional regulator, LacI family
    SEED: Ribose operon repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5524 Predicted transcriptional regulator no 0.55
    2 GFF5756 KEGG: flagellar protein FliT no 0.53
    3 GFF3820 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.52
    4 GFF2749 hypothetical protein no 0.48
    5 GFF2502 O-antigen acetylase no 0.47
    6 GFF2953 Transcriptional regulator, AraC family no 0.46
    7 GFF6430 L-carnitine dehydratase/bile acid-inducible protein F no 0.46
    8 GFF6316 no description no 0.45
    9 GFF7178 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.30 0.45
    10 GFF4792 PhnB protein no 0.44
    11 GFF6357 T6SS forkhead associated domain protein ImpI/VasC no 0.43
    12 GFF1492 putative 2-pyrone-4,6-dicarboxylic acid hydrolase no 0.43
    13 GFF3784 ABC transporter, substrate-binding protein RSc1750 no 0.43
    14 GFF3438 Amidohydrolase family protein no 0.43
    15 GFF1663 Isocitrate lyase (EC 4.1.3.1) no 0.43
    16 GFF7149 4-hydroxyproline epimerase (EC 5.1.1.8) no 0.43
    17 GFF1923 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.42
    18 GFF761 FIG00537905: hypothetical protein no 0.42
    19 GFF2570 Rhodanese-related sulfurtransferase YibN no 0.42
    20 GFF6011 putative decarboxylase no 0.42

    Or look for negative cofitness