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  • Top cofit genes for PS417_07085 from Pseudomonas simiae WCS417

    transcriptional regulator
    SEED: Tricarboxylate transport transcriptional regulator TctD
    KEGG: two-component system, OmpR family, response regulator TctD

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_07090 histidine kinase 0.99 0.79
    2 PS417_07065 tripartite tricarboxylate transporter TctA 0.98 0.79
    3 PS417_07070 membrane protein 0.96 0.77
    4 PS417_07075 tricarboxylic transport membrane protein 0.99 0.75
    5 PS417_07080 porin 0.97 0.74
    6 PS417_05540 histidine kinase 0.17 0.62
    7 PS417_05165 cytosol aminopeptidase 0.30 0.62
    8 PS417_05510 alpha/beta hydrolase 0.92 0.48
    9 PS417_23210 serine acetyltransferase 0.51 0.38
    10 PS417_12205 hypothetical protein no 0.37
    11 PS417_12200 microcin ABC transporter permease 0.68 0.33
    12 PS417_26985 phosphoenolpyruvate-protein phosphotransferase 0.55 0.32
    13 PS417_12195 ABC transporter permease 0.72 0.32
    14 PS417_23215 RNA methyltransferase 0.50 0.31
    15 PS417_23735 hypothetical protein no 0.30
    16 PS417_02480 DNA mismatch repair protein no 0.27
    17 PS417_07635 transcription-repair coupling factor 0.29 0.25
    18 PS417_26695 uracil phosphoribosyltransferase no 0.24
    19 PS417_12180 ABC transporter substrate-binding protein no 0.24
    20 PS417_01445 hypothetical protein no 0.22

    Or look for negative cofitness