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  • Top cofit genes for GFF1391 from Variovorax sp. SCN45

    Uncharacterized MFS-type transporter
    SEED: putative transmembrane efflux protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7093 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) no 0.62
    2 GFF5511 FIG000875: Thioredoxin domain-containing protein EC-YbbN no 0.61
    3 GFF5220 putative secreted oxidoreductase no 0.56
    4 GFF1415 Lactoylglutathione lyase and related lyases no 0.54
    5 GFF1371 Fe-S protein, homolog of lactate dehydrogenase SO1521 no 0.54
    6 GFF6501 Uncharacterized MFS-type transporter no 0.53
    7 GFF3081 no description no 0.51
    8 GFF174 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.51
    9 GFF3231 hypothetical protein no 0.50
    10 GFF2811 Transcriptional regulator, YafY family no 0.50
    11 GFF5489 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake no 0.50
    12 GFF2338 Amidase family protein Atu4441 no 0.48
    13 GFF7058 Zinc-binding GTPase YciC no 0.48
    14 GFF3338 Threonine efflux protein no 0.48
    15 GFF827 Predicted cobalt transporter CbtC no 0.47
    16 GFF422 no description no 0.46
    17 GFF5116 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD no 0.46
    18 GFF878 COGs COG2343 no 0.46
    19 GFF1427 Mandelate racemase (EC 5.1.2.2) no 0.46
    20 GFF2561 FIG00931134: hypothetical protein no 0.46

    Or look for negative cofitness