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  • Top cofit genes for GFF1364 from Variovorax sp. SCN45

    diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
    SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2341 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.66
    2 GFF1312 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.63
    3 GFF1126 Metal transporter, ZIP family no 0.63
    4 GFF3277 Membrane protein insertion efficiency factor YidD no 0.62
    5 GFF460 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.62
    6 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) no 0.61
    7 GFF3425 no description no 0.59
    8 GFF837 FIG01002808: hypothetical protein no 0.59
    9 GFF2856 Transcriptional regulator, LysR family no 0.59
    10 GFF6016 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) no 0.58
    11 GFF2136 Ribokinase (EC 2.7.1.15) no 0.58
    12 GFF2539 FAD/FMN-containing dehydrogenases no 0.58
    13 GFF1734 no description no 0.57
    14 GFF3800 Fumarylacetoacetate hydrolase family protein no 0.56
    15 GFF3514 no description no 0.56
    16 GFF1556 Tricarboxylate transport protein TctC no 0.56
    17 GFF406 hypothetical protein no 0.56
    18 GFF2422 Polysaccharide deacetylase no 0.56
    19 GFF3050 Lactam utilization protein LamB no 0.56
    20 GFF5461 2-dehydrotetronate isomerase (EC 5.3.1.35) no 0.56

    Or look for negative cofitness