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  • Top cofit genes for GFF1330 from Variovorax sp. SCN45

    UPF0061 protein YdiU
    SEED: Selenoprotein O and cysteine-containing homologs

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4983 fumarate reductase/succinate dehydrogenase flavoprotein-like no 0.55
    2 GFF5394 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.53
    3 GFF2440 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.52
    4 GFF4169 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.51
    5 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.25 0.50
    6 GFF1092 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) no 0.50
    7 GFF1028 FIG027190: Putative transmembrane protein 0.46 0.50
    8 GFF1320 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.50
    9 GFF4159 no description no 0.49
    10 GFF5025 Aspartate aminotransferase (EC 2.6.1.1) no 0.49
    11 GFF6903 Transcriptional regulator, LysR family no 0.48
    12 GFF1039 Far-related protein no 0.48
    13 GFF5814 Rhodanese-related sulfurtransferase no 0.48
    14 GFF3766 hypothetical protein no 0.48
    15 GFF7263 Malate dehydrogenase (EC 1.1.1.37) no 0.48
    16 GFF4148 hypothetical protein no 0.48
    17 GFF5654 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) no 0.47
    18 GFF1996 Indoleacetamide hydrolase (EC 3.5.1.-) no 0.47
    19 GFF6157 Carbon monoxide oxidation accessory protein CoxD no 0.46
    20 GFF6543 Transcriptional regulator, LysR family no 0.46

    Or look for negative cofitness