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  • Top cofit genes for GFF1315 from Variovorax sp. SCN45

    Cyclic di-GMP-binding protein BcsB
    SEED: Cyclic di-GMP binding protein precursor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4771 Multidrug efflux system EmrAB-OMF, inner-membrane proton/drug antiporter EmrB (MFS type) 0.41 0.61
    2 GFF6149 FAD-dependent oxidoreductase no 0.58
    3 GFF5840 hypothetical protein no 0.57
    4 GFF5684 3-ketoacyl-CoA thiolase (EC 2.3.1.16) no 0.56
    5 GFF4784 no description no 0.55
    6 GFF259 Bis-ABC ATPase YheS 0.39 0.55
    7 GFF1292 Macrolide-specific efflux protein MacA no 0.55
    8 GFF7323 Transcriptional response regulatory protein GlrR no 0.54
    9 GFF6019 Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) no 0.54
    10 GFF1507 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.53
    11 GFF6699 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.53
    12 GFF7410 no description no 0.53
    13 GFF304 Ubiquinone/menaquinone biosynthesis methyltransferase family protein no 0.53
    14 GFF5651 hypothetical protein no 0.52
    15 GFF4397 hypothetical protein no 0.52
    16 GFF5150 Taurine ABC transporter, permease protein TauC no 0.51
    17 GFF765 hypothetical protein no 0.51
    18 GFF1313 Cellulose synthase operon protein C no 0.51
    19 GFF7373 CaiB/BaiF family protein no 0.51
    20 GFF4931 peptidase, family M14 no 0.51

    Or look for negative cofitness