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  • Top cofit genes for PS417_06420 from Pseudomonas simiae WCS417

    ATP-dependent DNA ligase
    SEED: ATP-dependent DNA ligase (EC 6.5.1.1) LigC
    KEGG: DNA ligase (ATP)

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_20845 hypothetical protein no 0.20
    2 PS417_18295 histidine kinase no 0.20
    3 PS417_04770 LysR family transcriptional regulator no 0.20
    4 PS417_15055 C4-dicarboxylate ABC transporter no 0.18
    5 PS417_11280 HxcX atypical pseudopilin no 0.18
    6 PS417_06725 alpha-ketoglutarate permease no 0.18
    7 PS417_16860 diadenosine tetraphosphate hydrolase no 0.18
    8 PS417_06785 NADH:flavin oxidoreductase no 0.18
    9 PS417_07965 multidrug DMT transporter permease no 0.18
    10 PS417_17500 sulfurtransferase 0.26 0.17
    11 PS417_20470 hypothetical protein no 0.17
    12 PS417_11465 LysR family transcriptional regulator no 0.17
    13 PS417_26295 gamma-butyrobetaine dioxygenase no 0.17
    14 PS417_15390 hypothetical protein no 0.17
    15 PS417_00845 transcriptional regulator no 0.17
    16 PS417_01360 4-oxalocrotonate tautomerase 0.43 0.16
    17 PS417_23160 50S rRNA methyltransferase 0.42 0.16
    18 PS417_18990 membrane protein no 0.16
    19 PS417_11235 hypothetical protein no 0.16
    20 PS417_03235 xanthine permease XanP 0.53 0.16

    Or look for negative cofitness