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  • Top cofit genes for PS417_06365 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: RNA polymerase sigma factor RpoS
    KEGG: RNA polymerase nonessential primary-like sigma factor

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_13425 cupin no 0.78
    2 PS417_16370 chemotaxis protein CheY 0.83 0.78
    3 PS417_10720 chemotaxis protein CheY 0.78 0.76
    4 PS417_16160 ABC transporter substrate-binding protein no 0.74
    5 PS417_28265 pyridoxamine kinase 0.56 0.74
    6 PS417_27605 hypothetical protein no 0.73
    7 PS417_20955 secretion protein no 0.73
    8 PS417_21045 cysteine synthase 0.26 0.72
    9 PS417_16070 TonB-dependent receptor no 0.72
    10 PS417_21050 serine acetyltransferase 0.25 0.71
    11 PS417_06970 LysR family transcriptional regulator no 0.71
    12 PS417_21040 sulfurylase 0.48 0.70
    13 PS417_12610 RNA polymerase sigma factor 0.27 0.69
    14 PS417_21375 ADP-ribosylglycohydrolase 0.59 0.67
    15 PS417_13940 racemase no 0.67
    16 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.75 0.64
    17 PS417_03070 LuxR family transcriptional regulator 0.67 0.64
    18 PS417_19560 amino acid ABC transporter substrate-binding protein 0.83 0.62
    19 PS417_24605 thiamine-phosphate pyrophosphorylase no 0.61
    20 PS417_12550 chemotaxis protein no 0.61

    Or look for negative cofitness