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  • Top cofit genes for GFF1185 from Variovorax sp. SCN45

    Transcriptional regulator, AraC family
    SEED: PROBABLE TRANSCRIPTION REGULATOR PROTEIN

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6604 FIG00457034: hypothetical protein no 0.65
    2 GFF1441 putative membrane protein no 0.64
    3 GFF2873 Propionyl-CoA thioesterase activity no 0.59
    4 GFF1179 no description no 0.58
    5 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) no 0.57
    6 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis no 0.57
    7 GFF6556 hypothetical protein no 0.57
    8 GFF3454 Cys regulon transcriptional activator CysB no 0.56
    9 GFF466 hypothetical protein no 0.56
    10 GFF1175 Two-component system response regulator QseB no 0.54
    11 GFF2132 Thiol:disulfide interchange protein DsbC no 0.54
    12 GFF6177 Putative transmembrane protein no 0.54
    13 GFF6027 Nucleoside-diphosphate-sugar epimerases no 0.53
    14 GFF6123 ABC-type antimicrobial peptide transport system, ATPase component no 0.53
    15 GFF2294 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy no 0.52
    16 GFF4413 CopG domain-containing protein no 0.52
    17 GFF2435 FIG138928: iron-regulated membrane protein no 0.51
    18 GFF3054 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) 0.28 0.51
    19 GFF6861 no description no 0.51
    20 GFF2640 PKHD-type hydroxylase YbiX no 0.51

    Or look for negative cofitness