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  • Top cofit genes for GFF1120 from Variovorax sp. SCN45

    diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
    SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2739 Putative SAM-dependent methyltransferase Bucepa02006346 no 0.63
    2 GFF25 Alcohol dehydrogenase (EC 1.1.1.1) no 0.62
    3 GFF3716 Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway no 0.58
    4 GFF4776 Broad-specificity amino acid ABC transporter, substrate-binding protein no 0.58
    5 GFF536 no description no 0.58
    6 GFF6373 T6SS component TssA (ImpA) no 0.55
    7 GFF2597 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) no 0.53
    8 GFF378 RNA (nucleoside 2'-O)-methyltransferase no 0.53
    9 GFF1269 no description no 0.52
    10 GFF7352 1,2-phenylacetyl-CoA epoxidase, subunit D (EC 1.14.13.149) no 0.52
    11 GFF6271 Phosphatidylglycerophosphatase A (EC 3.1.3.27) no 0.52
    12 GFF50 Murein hydrolase activator NlpD no 0.52
    13 GFF4941 Gfa-like protein no 0.52
    14 GFF1971 Creatinine amidohydrolase (EC 3.5.2.10) no 0.52
    15 GFF4880 y4eB gene in pNGR234a homolog no 0.51
    16 GFF6701 Regulatory protein, RpfE type no 0.50
    17 GFF286 Transcriptional regulator, LysR family no 0.50
    18 GFF3369 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis no 0.50
    19 GFF7139 MATE efflux family protein no 0.50
    20 GFF4711 Transamidase GatB domain protein no 0.49

    Or look for negative cofitness