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  • Top cofit genes for GFF1119 from Variovorax sp. SCN45

    Ribonuclease HI (EC 3.1.26.4)
    SEED: Ribonuclease HI (EC 3.1.26.4)
    KEGG: ribonuclease HI

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.93
    2 GFF2835 putative TonB-dependent receptor no 0.92
    3 GFF240 Cytosol aminopeptidase PepA (EC 3.4.11.1) no 0.84
    4 GFF5429 Iron(III) dicitrate transport protein FecA no 0.82
    5 GFF6392 hypothetical protein no 0.78
    6 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) 0.56 0.78
    7 GFF549 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) no 0.76
    8 GFF6294 Cell division protein no 0.75
    9 GFF4406 Alkane-1 monooxygenase (EC 1.14.15.3) no 0.75
    10 GFF6036 DNA translocase FtsK no 0.75
    11 GFF239 DNA polymerase III chi subunit (EC 2.7.7.7) no 0.73
    12 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.70
    13 GFF4015 KEGG: lactoylglutathione lyase no 0.69
    14 GFF2734 DNA topoisomerase IV subunit B (EC 5.99.1.3) no 0.69
    15 GFF2505 hypothetical protein no 0.68
    16 GFF5208 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 no 0.68
    17 GFF489 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) 0.72 0.68
    18 GFF2730 DNA topoisomerase IV subunit A (EC 5.99.1.3) no 0.67
    19 GFF5817 Two-component system sensor histidine kinase no 0.67
    20 GFF4407 Alkan-1-ol dehydrogenase, PQQ-dependent (EC 1.1.99.20) no 0.67

    Or look for negative cofitness