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  • Top cofit genes for GFF1110 from Variovorax sp. SCN45

    Recombination protein RecR
    SEED: Recombination protein RecR
    KEGG: recombination protein RecR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1247 Sulfate and thiosulfate binding protein CysP 0.58 0.63
    2 GFF426 Cobyric acid synthase (EC 6.3.5.10) no 0.59
    3 GFF2177 no description no 0.58
    4 GFF1010 hypothetical protein no 0.58
    5 GFF871 Vitamin B12 ABC transporter, substrate-binding protein BtuF no 0.56
    6 GFF2424 ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) no 0.56
    7 GFF3694 Phosphoesterase, PA-phosphatase related no 0.54
    8 GFF3415 Cyclase no 0.54
    9 GFF701 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.54
    10 GFF2415 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) no 0.53
    11 GFF2136 Ribokinase (EC 2.7.1.15) 0.56 0.53
    12 GFF6247 ApaG protein 0.54 0.53
    13 GFF5372 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA no 0.52
    14 GFF1062 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases no 0.52
    15 GFF625 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.52
    16 GFF1139 Domain of unknown function / Efflux ABC transporter, permease protein no 0.52
    17 GFF1711 DUF3701 domain / Site-specific tyrosine recombinase no 0.51
    18 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.83 0.51
    19 GFF5143 no description no 0.51
    20 GFF6807 BUG/TctC family periplasmic protein no 0.51

    Or look for negative cofitness