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  • Top cofit genes for GFF1105 from Variovorax sp. SCN45

    Helicase
    SEED: Helicase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7018 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.47
    2 GFF1106 UvrD/REP helicase no 0.46
    3 GFF6258 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase (EC 4.7.1.1) no 0.44
    4 GFF1984 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) no 0.44
    5 GFF4839 Transcriptional regulator PA2737, MerR family no 0.43
    6 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) no 0.43
    7 GFF5997 hypothetical protein no 0.38
    8 GFF651 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) no 0.38
    9 GFF3775 Two-component transcriptional response regulator, OmpR family no 0.38
    10 GFF6036 DNA translocase FtsK no 0.38
    11 GFF2707 hypothetical protein no 0.37
    12 GFF7146 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster no 0.37
    13 GFF7295 HPr kinase/phosphorylase no 0.36
    14 GFF6875 hypothetical protein no 0.36
    15 GFF889 FIG00349738: hypothetical protein no 0.35
    16 GFF3624 Putative transmembrane protein no 0.35
    17 GFF5808 Putative oxidoreductase no 0.34
    18 GFF6876 Aminotransferase, DegT/DnrJ/EryC1/StrS family no 0.34
    19 GFF5189 L-arabinolactonase (EC 3.1.1.15) no 0.34
    20 GFF890 Two-component system sensor histidine kinase no 0.34

    Or look for negative cofitness