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  • Top cofit genes for GFF1016 from Sphingobium sp. HT1-2

    Mandelate racemase /muconate lactonizing enzyme related protein (MR/MLE)
    SEED: Gluconate dehydratase (EC 4.2.1.39)
    KEGG: L-rhamnonate dehydratase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF412 Bis-ABC ATPase YheS 0.18 0.82
    2 GFF4106 PDZ domain family protein no 0.73
    3 GFF3864 hypothetical protein no 0.73
    4 GFF4998 hypothetical protein no 0.73
    5 GFF4190 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme no 0.71
    6 GFF4014 hypothetical protein no 0.71
    7 GFF5080 hypothetical protein no 0.71
    8 GFF3747 33 kDa chaperonin HslO no 0.69
    9 GFF1249 Capsular polysaccharide biosynthesis protein no 0.69
    10 GFF1471 Transcriptional regulator, LysR family no 0.69
    11 GFF3075 Fluoride ion transporter CrcB no 0.69
    12 GFF442 hypothetical protein no 0.68
    13 GFF2913 hypothetical protein no 0.68
    14 GFF3232 hypothetical protein no 0.67
    15 GFF1889 Transcriptional regulator, AcrR family no 0.67
    16 GFF2033 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) 0.27 0.66
    17 GFF5140 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) no 0.66
    18 GFF4504 Chaperone protein ClpB (ATP-dependent unfoldase) no 0.65
    19 GFF999 rhamnogalacturonan acetylesterase no 0.65
    20 GFF3229 hypothetical protein no 0.65

    Or look for negative cofitness