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  • Top cofit genes for PS417_05100 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_05090 ferric citrate outer membrane transporter (fecA) (from data) 0.62 0.25
    2 PS417_17670 ABC transporter permease no 0.23
    3 PS417_12345 cobalamin biosynthesis protein CobW 0.29 0.22
    4 PS417_06735 3-oxoadipate enol-lactonase no 0.22
    5 PS417_12005 hypothetical protein no 0.21
    6 PS417_17785 4-amino-4-deoxy-L-arabinose transferase no 0.21
    7 PS417_22480 ferritin 0.68 0.20
    8 PS417_12535 nitrilase 0.36 0.20
    9 PS417_00305 cytochrome oxidase subunit I 0.56 0.20
    10 PS417_06405 amino acid ABC transporter permease no 0.20
    11 PS417_10240 hypothetical protein no 0.20
    12 PS417_25835 hypothetical protein no 0.19
    13 PS417_07545 ABC transporter ATP-binding protein no 0.19
    14 PS417_00300 cytochrome B559 subunit alpha 0.56 0.19
    15 PS417_17175 AraC family transcriptional regulator no 0.19
    16 PS417_15285 type VI secretion protein no 0.19
    17 PS417_25645 peptidase M23 no 0.19
    18 PS417_03475 type III secretion protein no 0.18
    19 PS417_27245 aminotransferase DegT no 0.18
    20 PS417_16510 Clp protease ClpX no 0.18

    Or look for negative cofitness