Top cofit genes for EX28DRAFT_3557 from Enterobacter asburiae PDN3

Bacterial regulatory proteins, luxR family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX28DRAFT_0178		Putative Zn-dependent protease, contains TPR repeats	no	0.69
2	EX28DRAFT_2720		Small protein A (tmRNA-binding)	no	0.69
3	EX28DRAFT_1800		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	no	0.69
4	EX28DRAFT_4540		Endonuclease V (EC 3.1.21.-)	no	0.67
5	EX28DRAFT_3750		periplasmic serine protease, Do/DeqQ family	no	0.65
6	EX28DRAFT_0074		sigma E regulatory protein, MucB/RseB	no	0.64
7	EX28DRAFT_2634		hypothetical protein	no	0.64
8	EX28DRAFT_4196		YjcZ-like protein	no	0.63
9	EX28DRAFT_2807		Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	no	0.63
10	EX28DRAFT_3653		L-ribulose-5-phosphate 4-epimerase	no	0.62
11	EX28DRAFT_1022		cytochrome d oxidase, subunit II (cydB)	no	0.62
12	EX28DRAFT_2937		hypothetical protein	no	0.61
13	EX28DRAFT_2586		diguanylate cyclase (GGDEF) domain	no	0.61
14	EX28DRAFT_2213		dethiobiotin synthase	no	0.61
15	EX28DRAFT_1698		RNA	no	0.60
16	EX28DRAFT_3468		YecR-like lipoprotein	no	0.60
17	EX28DRAFT_2429		Helix-turn-helix domain	no	0.60
18	EX28DRAFT_1003		Methyl-accepting chemotaxis protein	no	0.59
19	EX28DRAFT_3083		SH3 domain protein	no	0.59
20	EX28DRAFT_2545		Uncharacterized protein conserved in bacteria	no	0.59

Or look for negative cofitness