Top cofit genes for EX28DRAFT_2429 from Enterobacter asburiae PDN3

Helix-turn-helix domain
SEED: putative DNA-binding protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX28DRAFT_2183		Predicted SAM-dependent methyltransferase	no	0.63
2	EX28DRAFT_2706		Outer membrane protein and related peptidoglycan-associated (lipo)proteins	no	0.61
3	EX28DRAFT_3557		Bacterial regulatory proteins, luxR family	no	0.60
4	EX28DRAFT_1507		V8-like Glu-specific endopeptidase	no	0.59
5	EX28DRAFT_1208		Predicted permease, DMT superfamily	no	0.59
6	EX28DRAFT_1252		TIGR00156 family protein	no	0.57
7	EX28DRAFT_1398		hypothetical protein	no	0.57
8	EX28DRAFT_0445		capsular exopolysaccharide family	no	0.57
9	EX28DRAFT_3937		Transcriptional regulators	no	0.57
10	EX28DRAFT_3997		Predicted flavoprotein	no	0.57
11	EX28DRAFT_2807		Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	no	0.57
12	EX28DRAFT_0813		Uncharacterized conserved protein	no	0.57
13	EX28DRAFT_0453		YadA-like C-terminal region/Collagen triple helix repeat (20 copies)	no	0.56
14	EX28DRAFT_2720		Small protein A (tmRNA-binding)	no	0.56
15	EX28DRAFT_3118		Phage-related baseplate assembly protein	no	0.56
16	EX28DRAFT_2839		protein-L-isoaspartate(D-aspartate) O-methyltransferase	no	0.55
17	EX28DRAFT_1193		diguanylate cyclase (GGDEF) domain	no	0.55
18	EX28DRAFT_0414		Putative effector of murein hydrolase LrgA	0.27	0.55
19	EX28DRAFT_2545		Uncharacterized protein conserved in bacteria	no	0.55
20	EX28DRAFT_0660		flagellar motor stator protein MotA	no	0.55

Or look for negative cofitness