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Cofit
Top cofit genes for ECD_t00083 from
Escherichia coli BL21
tRNA-Leu
Rank
Hit
Name
Description
Conserved?
Cofitness
1
ECD
_02423
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor
no
0.88
2
ECD
_00392
HU, DNA-binding transcriptional regulator, beta subunit
no
0.82
3
ECD
_02409
dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent
no
0.81
4
ECD
_03624
16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein
no
0.81
5
ECD
_03016
DnaA initiator-associating factor for replication initiation
no
0.79
6
ECD
_00342
nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
no
0.78
7
ECD
_00626
putative ion transport
no
0.76
8
ECD
_03134
ssDNA-binding protein, function unknown
no
0.76
9
ECD
_00142
poly(A) polymerase
no
0.76
10
ECD
_02116
spermidine nucleoid-associated protein
no
0.75
11
ECD
_03598
adenine permease, high affinity; adenine:H+ symporter
no
0.73
12
ECD
_03557
multidrug efflux system protein
no
0.73
13
ECD
_03198
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
no
0.72
14
ECD
_03501
UPF0701 family protein
no
0.72
15
ECD
_02302
nucleoside (except guanosine) transporter
no
0.71
16
ECD
_02817
KpsU protein
no
0.71
17
ECD
_04246
16S rRNA m(2)G1207 methyltransferase, SAM-dependent
no
0.71
18
ECD
_00061
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase
no
0.70
19
ECD
_01794
DUF2527 family heat-induced protein
no
0.70
20
ECD
_02244
putative semialdehyde dehydrogenase
no
0.70
Or look for
negative cofitness