Top cofit genes for ECD_03954 from Escherichia coli BL21

membrane fusion protein of efflux pump
SEED: Inner membrane component of tripartite multidrug resistance system

Rank	Hit	Name	Description	Conserved?	Cofitness
1	ECD_02789		DUF469 family protein	no	0.67
2	ECD_02873		hydrogenase 2, small subunit	no	0.65
3	ECD_00067		DedA family inner membrane protein	no	0.64
4	ECD_02416		Fe(2+) donor and activity modulator for cysteine desulfurase	no	0.63
5	ECD_02780		putative PilT family AAA+ ATPase	no	0.62
6	ECD_03266		Fe/S biogenesis protein, putative scaffold/chaperone protein	no	0.62
7	ECD_01082		23S rRNA pseudouridine(955,2504,2580) synthase	0.25	0.62
8	ECD_03911		chorismate--pyruvate lyase	0.31	0.62
9	ECD_02762		putative Zn-binding dehydrogenase	no	0.62
10	ECD_03242		shikimate kinase I	no	0.61
11	ECD_02950		2,4-dienoyl-CoA reductase, NADH and FMN-linked	no	0.61
12	ECD_02860		putative ATP-binding protein	no	0.61
13	ECD_03118		tRNA-dihydrouridine synthase B	0.26	0.60
14	ECD_02837		putative type II secretion protein GspE	no	0.60
15	ECD_02760		MtlR family putative transcriptional repressor	no	0.59
16	ECD_02831		putative type II secretion protein GspK	no	0.59
17	ECD_00764		ATP-dependent RNA helicase	no	0.59
18	ECD_02536		putative transporter	no	0.59
19	ECD_03033		tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase	no	0.59
20	ECD_02836		putative type II secretion protein GspF	no	0.58

Or look for negative cofitness