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  • Top cofit genes for ECD_02591 from Escherichia coli BL21

    RNA polymerase, sigma S (sigma 38) factor
    SEED: RNA polymerase sigma factor RpoS
    KEGG: RNA polymerase nonessential primary-like sigma factor

    Rank Hit Name Description Conserved? Cofitness  
    1 ECD_01875 tyrosine transporter 0.76 0.81
    2 ECD_01929 regulator of length of O-antigen component of lipopolysaccharide chains 0.46 0.78
    3 ECD_01281 regulatory protein for phage-shock-protein operon no 0.77
    4 ECD_01310 stress-induced protein no 0.76
    5 ECD_01702 chito-oligosaccharide deacetylase no 0.75
    6 ECD_01619 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated no 0.75
    7 ECD_00235 DNA-binding transcriptional regulator 0.91 0.74
    8 ECD_00443 DnaK co-chaperone, thioredoxin-like protein 0.46 0.74
    9 ECD_01557 S- and N-oxide reductase, A subunit, periplasmic no 0.74
    10 ECD_01059 lipoprotein, DUF1439 family no 0.74
    11 ECD_02244 putative semialdehyde dehydrogenase no 0.73
    12 ECD_01625 murein DD-endopeptidase, space-maker hydrolase no 0.73
    13 ECD_01487 phage N15 gp48-like protein no 0.73
    14 ECD_00632 UMP phosphatase no 0.73
    15 ECD_02021 D-tagatose 1,6-bisphosphate aldolase 2, subunit no 0.73
    16 ECD_01719 TVP38/TMEM64 family inner membrane protein no 0.73
    17 ECD_t00039 tRNA-Ala no 0.73
    18 ECD_01703 phospho-chitobiase; general 6-phospho-beta-glucosidase activity no 0.73
    19 ECD_04342 hypothetical protein no 0.73
    20 ECD_02627 mRNA interferase toxin, antitoxin is MazE no 0.72

    Or look for negative cofitness