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  • Top cofit genes for ECD_01080 from Escherichia coli BL21

    endoribonuclease; RNA-binding protein
    SEED: Ribonuclease E (EC 3.1.26.12)
    KEGG: ribonuclease E

    Rank Hit Name Description Conserved? Cofitness  
    1 ECD_02898 quorum sensing sensory histidine kinase in two-component regulatory system with QseB 0.65 0.64
    2 ECD_01751 scaffolding protein for murein synthesizing machinery no 0.60
    3 ECD_01063 UPF0502 family protein 0.26 0.56
    4 ECD_01059 lipoprotein, DUF1439 family 0.50 0.55
    5 ECD_01836 dihydroneopterin triphosphate pyrophosphatase 0.74 0.55
    6 ECD_02085 lysine transporter 0.80 0.54
    7 ECD_03029 ATP-dependent RNA helicase 0.78 0.54
    8 ECD_01824 putative DNA-binding transcriptional regulator 0.64 0.54
    9 ECD_01245 23S rRNA pseudouridine(2605) synthase 0.79 0.54
    10 ECD_00001 thr operon leader peptide no 0.53
    11 ECD_02906 ADP-ribose pyrophosphatase no 0.53
    12 ECD_01020 inactive ferrous ion transporter EfeUOB no 0.53
    13 ECD_01917 putrescine importer, low affinity no 0.52
    14 ECD_03506 RNA polymerase, omega subunit no 0.52
    15 ECD_02470 ATP-dependent RNA helicase 0.82 0.52
    16 ECD_01739 putative DNA-binding transcriptional regulator no 0.52
    17 ECD_02098 fused fructose-specific PTS enzymes: IIA component/HPr component 0.64 0.52
    18 ECD_01702 chito-oligosaccharide deacetylase no 0.51
    19 ECD_01097 fused glucose-specific PTS enzymes: IIB component/IIC component no 0.51
    20 ECD_02478 protein lysine acetyltransferase no 0.51

    Or look for negative cofitness