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  • Top cofit genes for ECD_01015 from Escherichia coli BL21

    pyrimidine oxygenase, FMN-dependent
    SEED: Predicted monooxygenase RutA in novel pyrimidine catabolism pathway
    KEGG: putative monooxygenase RutA

    Rank Hit Name Description Conserved? Cofitness  
    1 ECD_04212 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB no 0.51
    2 ECD_00755 UPF0104 family inner membrane protein no 0.50
    3 ECD_01218 oligopeptide ABC transporter permease no 0.50
    4 ECD_02395 cyclic-di-GMP phosphodiesterase, anaerobic no 0.48
    5 ECD_02075 dihydropyrimidine dehydrogenase, NADH-dependent, subunit N no 0.48
    6 ECD_02303 putative diguanylate cyclase no 0.48
    7 ECD_00297 lactose permease 0.39 0.48
    8 ECD_00676 putative fimbrial protein no 0.47
    9 ECD_00759 putative ABC transporter permease no 0.47
    10 ECD_02283 oxalyl CoA decarboxylase, ThDP-dependent no 0.47
    11 ECD_00222 putative lipoprotein and C40 family peptidase 0.67 0.46
    12 ECD_02716 guanine deaminase 0.59 0.46
    13 ECD_02176 outer membrane protein, putative porin no 0.45
    14 ECD_02494 OM lipoprotein putative positive effector of YfiN activity 0.60 0.45
    15 ECD_00691 alpha-mannosidase no 0.45
    16 ECD_01109 L,D-transpeptidase linking Lpp to murein 0.46 0.45
    17 ECD_00646 lipoprotein no 0.44
    18 ECD_02820 hypothetical protein no 0.44
    19 ECD_01048 multicopy suppressor of secY and secA 0.58 0.44
    20 ECD_03592 tryptophanase/L-cysteine desulfhydrase, PLP-dependent no 0.44

    Or look for negative cofitness