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Cofit
Top cofit genes for DZA65_RS22690 from
Dickeya dianthicola ME23
IS3 family transposase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
DZA65
_RS11345
superoxide dismutase
no
0.54
2
DZA65
_RS01185
PLP-dependent aminotransferase family protein
no
0.50
3
DZA65
_RS18795
type VI secretion system tip protein VgrG
no
0.49
4
DZA65
_RS18810
GPW/gp25 family protein
no
0.48
5
DZA65
_RS00025
MFS transporter
no
0.46
6
DZA65
_RS22510
3-oxoacyl-ACP reductase FabG
no
0.45
7
DZA65
_RS12810
YnbE family lipoprotein
no
0.43
8
DZA65
_RS08435
biotin-independent malonate decarboxylase subunit gamma
no
0.43
9
DZA65
_RS08280
energy transducer TonB
no
0.42
10
DZA65
_RS07890
ABC transporter permease
no
0.42
11
DZA65
_RS09180
DsbA family protein
no
0.42
12
DZA65
_RS11355
methylated-DNA--[protein]-cysteine S-methyltransferase
no
0.42
13
DZA65
_RS17260
class I SAM-dependent methyltransferase
no
0.42
14
DZA65
_RS14620
DUF4158 domain-containing protein
no
0.41
15
DZA65
_RS01510
RNA polymerase factor sigma-54
no
0.41
16
DZA65
_RS10410
GPW/gp25 family protein
no
0.41
17
DZA65
_RS21950
heat shock chaperone IbpB
no
0.40
18
DZA65
_RS14755
ABC transporter ATP-binding protein
no
0.40
19
DZA65
_RS18485
glycoside hydrolase family 1 protein
no
0.40
20
DZA65
_RS10085
sensor histidine kinase
no
0.40
Or look for
negative cofitness