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  • Top cofit genes for DZA65_RS21730 from Dickeya dianthicola ME23

    high-affinity branched-chain amino acid ABC transporter permease LivM
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS02330 ABC transporter ATP-binding protein no 0.56
    2 DZA65_RS05550 Rho-binding antiterminator 0.28 0.55
    3 DZA65_RS04870 DUF3577 domain-containing protein no 0.50
    4 DZA65_RS22320 YgiW/YdeI family stress tolerance OB fold protein 0.62 0.49
    5 DZA65_RS12830 HAMP domain-containing protein no 0.49
    6 DZA65_RS02580 acetyltransferase no 0.48
    7 DZA65_RS05555 YaeP family protein no 0.47
    8 DZA65_RS07300 LysR family transcriptional regulator no 0.47
    9 DZA65_RS10735 MipA/OmpV family protein no 0.44
    10 DZA65_RS14860 hydrogenase formation protein HypD no 0.44
    11 DZA65_RS00150 glucokinase no 0.44
    12 DZA65_RS21315 HTH-type transcriptional activator IlvY 0.35 0.43
    13 DZA65_RS12245 type III secretion system export apparatus subunit SctS no 0.43
    14 DZA65_RS18715 type I-F CRISPR-associated endonuclease Cas1 no 0.43
    15 DZA65_RS01170 DUF1176 domain-containing protein no 0.42
    16 DZA65_RS08220 hypothetical protein no 0.42
    17 DZA65_RS04570 NAD-dependent epimerase/dehydratase family protein no 0.42
    18 DZA65_RS02990 TerC family protein 0.39 0.42
    19 DZA65_RS22790 hypothetical protein no 0.42
    20 DZA65_RS17850 allantoinase PuuE 0.40 0.42

    Or look for negative cofitness