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  • Top cofit genes for DZA65_RS19915 from Dickeya dianthicola ME23

    nitrogenase cofactor biosynthesis protein NifB
    SEED: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
    KEGG: nitrogen fixation protein NifB

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS10640 ATP-binding protein no 0.49
    2 DZA65_RS02535 HAMP domain-containing protein no 0.48
    3 DZA65_RS18780 phage tail protein no 0.47
    4 DZA65_RS07765 hypochlorite stress DNA-binding transcriptional regulator HypT no 0.47
    5 DZA65_RS16445 hypothetical protein no 0.47
    6 DZA65_RS14735 NAD(P)H-dependent oxidoreductase no 0.46
    7 DZA65_RS04925 Flp pilus assembly complex ATPase component TadA no 0.45
    8 DZA65_RS12505 carboxy terminal-processing peptidase no 0.45
    9 DZA65_RS19920 nif-specific transcriptional activator NifA 0.88 0.45
    10 DZA65_RS17855 Asp/Glu racemase 0.40 0.44
    11 DZA65_RS13505 hypothetical protein no 0.43
    12 DZA65_RS09955 LysR family transcriptional regulator no 0.43
    13 DZA65_RS18735 excinuclease ABC subunit UvrA 0.25 0.42
    14 DZA65_RS03585 helix-turn-helix transcriptional regulator no 0.42
    15 DZA65_RS22120 tetratricopeptide repeat protein no 0.42
    16 DZA65_RS05415 SecY-interacting protein no 0.41
    17 DZA65_RS04600 conjugal transfer protein TraF no 0.41
    18 DZA65_RS21780 DUF1820 family protein no 0.41
    19 DZA65_RS18575 ABC transporter permease subunit no 0.40
    20 DZA65_RS02605 oxidoreductase no 0.40

    Or look for negative cofitness