Top cofit genes for DZA65_RS19680 from Dickeya dianthicola ME23

RNA chaperone Hfq
SEED: RNA-binding protein Hfq
KEGG: host factor-I protein

Rank Hit Name Description Conserved? Cofitness  
1 DZA65_RS19505 MDR efflux pump AcrAB transcriptional activator RobA 0.62 0.56
2 DZA65_RS17885 glycine betaine/L-proline ABC transporter substrate-binding protein ProX no 0.56
3 DZA65_RS07820 NADH-quinone oxidoreductase subunit B family protein no 0.56
4 DZA65_RS08140 type II toxin-antitoxin system HicB family antitoxin no 0.56
5 DZA65_RS01525 LPS export ABC transporter periplasmic protein LptC 0.43 0.52
6 DZA65_RS16230 sugar phosphate isomerase/epimerase 0.68 0.52
7 DZA65_RS17230 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI 0.48 0.52
8 DZA65_RS14800 alpha/beta hydrolase no 0.51
9 DZA65_RS02385 chemotaxis protein no 0.51
10 DZA65_RS01670 DnaA initiator-associating protein DiaA 0.69 0.51
11 DZA65_RS17710 YfiR family protein 0.62 0.50
12 DZA65_RS12835 hypothetical protein no 0.50
13 DZA65_RS09670 methyl-accepting chemotaxis protein no 0.48
14 DZA65_RS13605 purine nucleoside phosphoramidase no 0.47
15 DZA65_RS20580 FKBP-type peptidyl-prolyl cis-trans isomerase 0.81 0.46
16 DZA65_RS08075 TonB-dependent receptor no 0.46
17 DZA65_RS08590 sigma-54-dependent Fis family transcriptional regulator no 0.46
18 DZA65_RS20885 maltodextrin phosphorylase 0.71 0.45
19 DZA65_RS12260 peptide antibiotic transporter SbmA no 0.44
20 DZA65_RS16870 cyclic-guanylate-specific phosphodiesterase 0.75 0.44

Or look for negative cofitness