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  • Top cofit genes for DZA65_RS17825 from Dickeya dianthicola ME23

    MurR/RpiR family transcriptional regulator
    SEED: Putative rpiR-family transcriptional regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS09880 ATP-dependent Clp protease adapter ClpS 0.50 0.54
    2 DZA65_RS08105 AcsA protein no 0.53
    3 DZA65_RS06295 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase no 0.51
    4 DZA65_RS03705 hypothetical protein no 0.50
    5 DZA65_RS12465 nitrate reductase subunit alpha 0.55 0.50
    6 DZA65_RS18055 DUF3561 family protein 0.61 0.50
    7 DZA65_RS15010 hypothetical protein no 0.49
    8 DZA65_RS22595 4'-phosphopantetheinyl transferase no 0.49
    9 DZA65_RS21830 hypothetical protein no 0.48
    10 DZA65_RS08970 8-amino-7-oxononanoate synthase 0.26 0.47
    11 DZA65_RS12480 NarK family nitrate/nitrite MFS transporter no 0.47
    12 DZA65_RS00350 hypothetical protein no 0.47
    13 DZA65_RS03895 myo-inosose-2 dehydratase no 0.47
    14 DZA65_RS12490 two-component system response regulator NarL no 0.47
    15 DZA65_RS17175 ABC transporter ATP-binding protein no 0.47
    16 DZA65_RS19310 RNA polymerase-associated protein RapA 0.63 0.46
    17 DZA65_RS13885 flagellar protein FliT no 0.46
    18 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.41 0.46
    19 DZA65_RS07010 molybdate ABC transporter substrate-binding protein no 0.46
    20 DZA65_RS12460 nitrate reductase subunit beta no 0.45

    Or look for negative cofitness