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  • Top cofit genes for DZA65_RS17340 from Dickeya dianthicola ME23

    ribosome-associated translation inhibitor RaiA
    SEED: Ribosome hibernation protein YfiA
    KEGG: ribosome-associated inhibitor A

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS04980 integrating conjugative element protein no 0.48
    2 DZA65_RS14475 DUF1738 domain-containing protein no 0.45
    3 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.65 0.44
    4 DZA65_RS07625 type IV secretion system protein VirB5 no 0.43
    5 DZA65_RS14595 cupin no 0.43
    6 DZA65_RS01745 NAD(P)H-dependent oxidoreductase 0.59 0.42
    7 DZA65_RS07360 glutathione S-transferase family protein no 0.42
    8 DZA65_RS17740 murein L,D-transpeptidase 0.62 0.42
    9 DZA65_RS01350 DNA-binding transcriptional regulator Fis no 0.41
    10 DZA65_RS13745 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee no 0.41
    11 DZA65_RS03260 lipoprotein NlpI 0.34 0.41
    12 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase no 0.40
    13 DZA65_RS19280 DedA family protein no 0.39
    14 DZA65_RS02045 arginine deiminase 0.46 0.38
    15 DZA65_RS01425 septum formation inhibitor Maf 0.37 0.38
    16 DZA65_RS06210 glycoside hydrolase family 28 protein no 0.38
    17 DZA65_RS15430 type 1 glutamine amidotransferase domain-containing protein no 0.38
    18 DZA65_RS14695 glycosyltransferase no 0.38
    19 DZA65_RS07330 DUF3320 domain-containing protein no 0.37
    20 DZA65_RS03775 MarR family transcriptional regulator no 0.37

    Or look for negative cofitness