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  • Top cofit genes for DZA65_RS16270 from Dickeya dianthicola ME23

    type II secretion system secretin GspD
    SEED: General secretion pathway protein D

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS13450 aspartate/tyrosine/aromatic aminotransferase 0.37 0.54
    2 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF no 0.52
    3 DZA65_RS02240 DeoR/GlpR transcriptional regulator no 0.52
    4 DZA65_RS00895 phosphoenolpyruvate carboxylase no 0.50
    5 DZA65_RS14210 hypothetical protein no 0.50
    6 DZA65_RS09990 3-phosphoserine/phosphohydroxythreonine transaminase no 0.49
    7 DZA65_RS17155 3-methyl-2-oxobutanoate hydroxymethyltransferase no 0.48
    8 DZA65_RS17165 aspartate 1-decarboxylase no 0.48
    9 DZA65_RS13420 aminopeptidase N no 0.48
    10 DZA65_RS01630 FAD-dependent oxidoreductase no 0.48
    11 DZA65_RS17160 pantoate--beta-alanine ligase no 0.47
    12 DZA65_RS10045 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB no 0.47
    13 DZA65_RS01635 glutamate synthase large subunit no 0.47
    14 DZA65_RS20275 homoserine O-succinyltransferase no 0.47
    15 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase no 0.46
    16 DZA65_RS01725 3',5'-cyclic-AMP phosphodiesterase 0.73 0.46
    17 DZA65_RS19780 amino acid ABC transporter permease 0.45 0.46
    18 DZA65_RS22210 nitrogen regulation protein NR(I) no 0.45
    19 DZA65_RS10055 histidinol dehydrogenase no 0.45
    20 DZA65_RS01510 RNA polymerase factor sigma-54 no 0.45

    Or look for negative cofitness