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  • Top cofit genes for DZA65_RS14535 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS09370 short-chain dehydrogenase no 0.47
    2 DZA65_RS22460 DNA gyrase subunit B no 0.47
    3 DZA65_RS13085 pyridoxamine 5'-phosphate oxidase no 0.46
    4 DZA65_RS05135 DUF1738 domain-containing protein no 0.45
    5 DZA65_RS04985 hypothetical protein no 0.44
    6 DZA65_RS20970 gluconate operon transcriptional repressor GntR no 0.44
    7 DZA65_RS18905 metal ABC transporter substrate-binding protein no 0.43
    8 DZA65_RS13810 HAMP domain-containing protein no 0.43
    9 DZA65_RS16285 type II secretion system major pseudopilin GspG no 0.43
    10 DZA65_RS02805 helix-turn-helix transcriptional regulator no 0.43
    11 DZA65_RS16885 pyridoxine 5'-phosphate synthase no 0.43
    12 DZA65_RS13740 NADH:flavin oxidoreductase/NADH oxidase 0.47 0.43
    13 DZA65_RS19020 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD no 0.41
    14 DZA65_RS03960 DNA primase no 0.41
    15 DZA65_RS05640 hypothetical protein no 0.41
    16 DZA65_RS04865 DNA topoisomerase III no 0.40
    17 DZA65_RS13200 MBL fold metallo-hydrolase no 0.40
    18 DZA65_RS10700 hypothetical protein no 0.40
    19 DZA65_RS00570 IS3 family transposase no 0.40
    20 DZA65_RS12805 FMN-dependent NADH-azoreductase no 0.39

    Or look for negative cofitness