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  • Top cofit genes for DZA65_RS13595 from Dickeya dianthicola ME23

    penicillin-binding protein activator LpoB
    SEED: Lipoprotein YcfM, part of a salvage pathway of unknown substrate
    KEGG: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS21655 sn-glycerol-3-phosphate ABC transporter permease UgpE 0.56 0.47
    2 DZA65_RS16790 polysaccharide lyase no 0.46
    3 DZA65_RS16750 ABC transporter ATP-binding protein no 0.45
    4 DZA65_RS06795 deoxyribodipyrimidine photo-lyase no 0.43
    5 DZA65_RS17790 amidohydrolase no 0.40
    6 DZA65_RS11080 L-arabinose ABC transporter ATP-binding protein AraG no 0.40
    7 DZA65_RS00950 DNA recombination protein RmuC no 0.39
    8 DZA65_RS20220 glucose-6-phosphate isomerase no 0.37
    9 DZA65_RS08010 hypothetical protein no 0.37
    10 DZA65_RS11100 bile acid:sodium symporter no 0.37
    11 DZA65_RS22855 hypothetical protein no 0.36
    12 DZA65_RS17000 AEC family transporter no 0.36
    13 DZA65_RS06755 two-component system response regulator KdpE 0.50 0.36
    14 DZA65_RS00830 divergent polysaccharide deacetylase family protein 0.65 0.35
    15 DZA65_RS21500 ATP-dependent protease subunit HslV no 0.35
    16 DZA65_RS10570 pyruvate kinase no 0.35
    17 DZA65_RS11340 hypothetical protein no 0.35
    18 DZA65_RS07065 dCTP deaminase no 0.35
    19 DZA65_RS05500 molecular chaperone Skp no 0.35
    20 DZA65_RS02460 YecA family protein no 0.35

    Or look for negative cofitness