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  • Top cofit genes for DZA65_RS12950 from Dickeya dianthicola ME23

    phage shock protein operon transcriptional activator
    SEED: Psp operon transcriptional activator
    KEGG: psp operon transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS12105 cupin domain-containing protein no 0.58
    2 DZA65_RS08835 type VI secretion system PAAR protein no 0.54
    3 DZA65_RS09740 alpha/beta hydrolase no 0.52
    4 DZA65_RS16960 tRNA-Ala no 0.52
    5 DZA65_RS15850 histidine utilization repressor no 0.51
    6 DZA65_RS17915 tRNA/rRNA methyltransferase 0.60 0.51
    7 DZA65_RS12355 ABC transporter permease 0.53 0.50
    8 DZA65_RS13545 arylamine N-acetyltransferase no 0.50
    9 DZA65_RS11150 ATP-dependent dethiobiotin synthetase BioD no 0.49
    10 DZA65_RS07455 IS3 family transposase no 0.48
    11 DZA65_RS04300 LuxR family transcriptional regulator 0.56 0.48
    12 DZA65_RS04305 cytosine permease no 0.47
    13 DZA65_RS05950 aldo/keto reductase no 0.47
    14 DZA65_RS14235 NAD(P)-binding domain-containing protein no 0.46
    15 DZA65_RS18145 GTP diphosphokinase no 0.45
    16 DZA65_RS13830 flagella biosynthesis regulatory protein FliZ no 0.45
    17 DZA65_RS20190 fumarate reductase subunit FrdC no 0.45
    18 DZA65_RS13440 porin no 0.44
    19 DZA65_RS07605 P-type conjugative transfer protein VirB9 no 0.44
    20 DZA65_RS01695 4,5-DOPA dioxygenase extradiol 0.53 0.44

    Or look for negative cofitness