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  • Top cofit genes for DZA65_RS12230 from Dickeya dianthicola ME23

    HrpP protein
    SEED: type III secretion protein HrpP

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS11510 hypothetical protein no 0.51
    2 DZA65_RS08495 hypothetical protein no 0.49
    3 DZA65_RS07455 IS3 family transposase no 0.47
    4 DZA65_RS04300 LuxR family transcriptional regulator no 0.46
    5 DZA65_RS14665 LysR family transcriptional regulator no 0.45
    6 DZA65_RS20185 succinate dehydrogenase/fumarate reductase iron-sulfur subunit no 0.45
    7 DZA65_RS15850 histidine utilization repressor no 0.44
    8 DZA65_RS04305 cytosine permease no 0.41
    9 DZA65_RS04815 hypothetical protein no 0.41
    10 DZA65_RS05395 DUF423 domain-containing protein no 0.41
    11 DZA65_RS21040 threonine export protein RhtC no 0.40
    12 DZA65_RS19275 acetolactate synthase small subunit no 0.39
    13 DZA65_RS16770 3-phenylpropionate MFS transporter no 0.39
    14 DZA65_RS16365 hypothetical protein no 0.39
    15 DZA65_RS17920 thioredoxin TrxC no 0.39
    16 DZA65_RS11630 YoaH family protein no 0.39
    17 DZA65_RS18615 LysR family transcriptional regulator no 0.38
    18 DZA65_RS11770 osmotically-inducible lipoprotein OsmE no 0.38
    19 DZA65_RS00985 3'-5' ssDNA/RNA exonuclease TatD no 0.38
    20 DZA65_RS16960 tRNA-Ala no 0.38

    Or look for negative cofitness