Top cofit genes for DZA65_RS11880 from Dickeya dianthicola ME23

two-component system response regulator PhoP
SEED: Transcriptional regulatory protein PhoP
KEGG: two-component system, OmpR family, response regulator PhoP

Rank	Hit	Name	Description	Conserved?	Cofitness
1	DZA65_RS15625		membrane protein YpdK	no	0.55
2	DZA65_RS20975		hypothetical protein	no	0.52
3	DZA65_RS10720		GlsB/YeaQ/YmgE family stress response membrane protein	no	0.50
4	DZA65_RS19030		nucleoside-specific channel-forming protein Tsx	0.65	0.48
5	DZA65_RS14370		hypothetical protein	no	0.47
6	DZA65_RS07350		tannase/feruloyl esterase family alpha/beta hydrolase	no	0.46
7	DZA65_RS04300		LuxR family transcriptional regulator	no	0.46
8	DZA65_RS04305		cytosine permease	no	0.46
9	DZA65_RS11905		Fe(2+) transporter permease subunit FeoB	0.34	0.46
10	DZA65_RS21580		CDF family cation-efflux transporter FieF	0.93	0.46
11	DZA65_RS09740		alpha/beta hydrolase	no	0.45
12	DZA65_RS22620		bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	0.80	0.45
13	DZA65_RS04675		SDR family oxidoreductase	no	0.45
14	DZA65_RS13365		membrane integrity-associated transporter subunit PqiA	no	0.45
15	DZA65_RS07410		hypothetical protein	no	0.44
16	DZA65_RS17325		polyphenol oxidase	0.56	0.44
17	DZA65_RS14230		KR domain-containing protein	no	0.44
18	DZA65_RS22260		molybdopterin-guanine dinucleotide biosynthesis protein B	no	0.44
19	DZA65_RS18615		LysR family transcriptional regulator	no	0.44
20	DZA65_RS11060		rhamnogalacturonate lyase	no	0.43

Or look for negative cofitness