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  • Top cofit genes for DZA65_RS11735 from Dickeya dianthicola ME23

    carbohydrate ABC transporter permease
    SEED: Putative sugar ABC transporter
    KEGG: oligogalacturonide transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS11835 oligogalacturonate lyase 0.74 0.84
    2 DZA65_RS11730 sugar ABC transporter permease 0.85 0.83
    3 DZA65_RS11745 carbohydrate ABC transporter substrate-binding protein 0.77 0.81
    4 DZA65_RS11740 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 0.77 0.81
    5 DZA65_RS11725 pectate disaccharide-lyase 0.76 0.75
    6 DZA65_RS11710 cupin domain-containing protein 0.79 0.75
    7 DZA65_RS02980 altronate dehydratase no 0.72
    8 DZA65_RS21825 sugar kinase 0.70 0.72
    9 DZA65_RS07465 MFS transporter no 0.71
    10 DZA65_RS10580 glucose-6-phosphate dehydrogenase no 0.71
    11 DZA65_RS11715 5-dehydro-4-deoxy-D-glucuronate isomerase 0.70 0.70
    12 DZA65_RS03330 EamA family transporter no 0.68
    13 DZA65_RS16710 iron-sulfur cluster assembly protein IscA no 0.67
    14 DZA65_RS11720 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.58 0.67
    15 DZA65_RS02975 tagaturonate reductase 0.23 0.66
    16 DZA65_RS18175 glucarate dehydratase no 0.65
    17 DZA65_RS07110 dTDP-glucose 4,6-dehydratase no 0.64
    18 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD no 0.64
    19 DZA65_RS16610 IMP dehydrogenase no 0.63
    20 DZA65_RS02305 type-2Aa cytolytic delta-endotoxin no 0.63

    Or look for negative cofitness