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  • Top cofit genes for DZA65_RS11085 from Dickeya dianthicola ME23

    L-arabinose ABC transporter permease AraH
    SEED: L-arabinose transport system permease protein (TC 3.A.1.2.2)
    KEGG: L-arabinose transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS09980 formate transporter FocA no 0.41
    2 DZA65_RS07365 SDR family oxidoreductase no 0.41
    3 DZA65_RS16285 type II secretion system major pseudopilin GspG no 0.41
    4 DZA65_RS08550 type VI secretion system baseplate subunit TssE no 0.41
    5 DZA65_RS16270 type II secretion system secretin GspD 0.18 0.41
    6 DZA65_RS14210 hypothetical protein no 0.40
    7 DZA65_RS17725 hypothetical protein no 0.40
    8 DZA65_RS12890 penicillin acylase family protein no 0.40
    9 DZA65_RS08040 type I-C CRISPR-associated endonuclease Cas1 no 0.39
    10 DZA65_RS15190 hypothetical protein no 0.39
    11 DZA65_RS14600 porphobilinogen synthase no 0.39
    12 DZA65_RS00475 glyoxalase no 0.38
    13 DZA65_RS04330 response regulator transcription factor no 0.38
    14 DZA65_RS02275 ABC transporter permease no 0.38
    15 DZA65_RS07895 ABC transporter ATP-binding protein no 0.38
    16 DZA65_RS14715 LysR family transcriptional regulator 0.52 0.37
    17 DZA65_RS12555 hypothetical protein no 0.36
    18 DZA65_RS19535 HAMP domain-containing protein no 0.36
    19 DZA65_RS00175 ABC transporter permease 0.15 0.36
    20 DZA65_RS08045 CRISPR-associated protein Cas4 no 0.36

    Or look for negative cofitness