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  • Top cofit genes for DZA65_RS10865 from Dickeya dianthicola ME23

    oligopeptide ABC transporter permease OppB
    SEED: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS20125 LysR family transcriptional regulator no 0.43
    2 DZA65_RS10860 oligopeptide ABC transporter substrate-binding protein OppA 1.00 0.43
    3 DZA65_RS14600 porphobilinogen synthase no 0.41
    4 DZA65_RS16505 winged helix-turn-helix transcriptional regulator no 0.40
    5 DZA65_RS04775 hypothetical protein no 0.40
    6 DZA65_RS15575 MbtH family NRPS accessory protein no 0.39
    7 DZA65_RS08900 discoidin domain-containing protein no 0.39
    8 DZA65_RS15015 tail fiber assembly protein no 0.38
    9 DZA65_RS17610 NAD(P)H-dependent oxidoreductase no 0.38
    10 DZA65_RS10260 NADH:flavin oxidoreductase no 0.36
    11 DZA65_RS11890 cupin domain-containing protein 0.45 0.36
    12 DZA65_RS15310 histidine ABC transporter ATP-binding protein HisP no 0.36
    13 DZA65_RS15095 head protein no 0.36
    14 DZA65_RS14380 TrbC/VirB2 family protein no 0.35
    15 DZA65_RS17895 L-valine transporter subunit YgaH 0.42 0.35
    16 DZA65_RS00530 DUF1471 domain-containing protein no 0.35
    17 DZA65_RS02950 MFS transporter 0.28 0.35
    18 DZA65_RS12500 DUF481 domain-containing protein no 0.35
    19 DZA65_RS04035 DUF2732 domain-containing protein no 0.34
    20 DZA65_RS12235 YscQ/HrcQ family type III secretion apparatus protein no 0.34

    Or look for negative cofitness