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  • Top cofit genes for DZA65_RS09965 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: LysR family transcriptional regulator PA0133

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS02315 ABC transporter substrate-binding protein no 0.47
    2 DZA65_RS03590 heavy metal sensor histidine kinase no 0.46
    3 DZA65_RS09610 HAD-IIIC family phosphatase no 0.46
    4 DZA65_RS19785 SDR family oxidoreductase 0.35 0.45
    5 DZA65_RS15705 alanine transaminase no 0.44
    6 DZA65_RS12310 amino acid ABC transporter ATP-binding protein no 0.43
    7 DZA65_RS02365 chorismate mutase no 0.42
    8 DZA65_RS10255 helix-turn-helix transcriptional regulator no 0.42
    9 DZA65_RS04765 restriction endonuclease subunit S no 0.42
    10 DZA65_RS06055 SmdA family multidrug ABC transporter permease/ATP-binding protein no 0.42
    11 DZA65_RS20200 DMT family protein no 0.41
    12 DZA65_RS04845 DUF2857 domain-containing protein no 0.41
    13 DZA65_RS13725 cytochrome b no 0.41
    14 DZA65_RS05990 muropeptide MFS transporter AmpG 0.80 0.40
    15 DZA65_RS15230 hypothetical protein no 0.40
    16 DZA65_RS08815 type II toxin-antitoxin system CcdA family antitoxin no 0.39
    17 DZA65_RS07600 P-type DNA transfer ATPase VirB11 no 0.39
    18 DZA65_RS11310 ABC transporter permease subunit no 0.38
    19 DZA65_RS17395 S-ribosylhomocysteine lyase 0.47 0.38
    20 DZA65_RS18390 biofilm peroxide resistance protein BsmA no 0.38

    Or look for negative cofitness