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  • Top cofit genes for DZA65_RS09660 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: Putative LysR-family transcriptional regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 0.49
    2 DZA65_RS05060 hypothetical protein no 0.44
    3 DZA65_RS18810 GPW/gp25 family protein no 0.42
    4 DZA65_RS15235 AAA family ATPase no 0.39
    5 DZA65_RS21950 heat shock chaperone IbpB no 0.38
    6 DZA65_RS17730 beta-Ala-His dipeptidase no 0.37
    7 DZA65_RS04680 oxidoreductase 0.32 0.37
    8 DZA65_RS21315 HTH-type transcriptional activator IlvY 0.26 0.37
    9 DZA65_RS03725 ABC transporter permease 0.17 0.36
    10 DZA65_RS11930 type I toxin-antitoxin system SymE family toxin no 0.36
    11 DZA65_RS21005 anaerobic glycerol-3-phosphate dehydrogenase subunit C no 0.35
    12 DZA65_RS17875 glycine betaine/L-proline ABC transporter ATP-binding protein ProV no 0.35
    13 DZA65_RS15920 SDR family NAD(P)-dependent oxidoreductase no 0.35
    14 DZA65_RS02335 ABC transporter ATP-binding protein no 0.35
    15 DZA65_RS00250 ABC transporter permease subunit no 0.35
    16 DZA65_RS09605 3-oxoacyl-ACP synthase no 0.35
    17 DZA65_RS08415 malonate decarboxylase subunit alpha 0.28 0.35
    18 DZA65_RS08220 hypothetical protein no 0.35
    19 DZA65_RS09750 DNA-binding transcriptional repressor DeoR no 0.34
    20 DZA65_RS04170 hypothetical protein 0.21 0.34

    Or look for negative cofitness