Top cofit genes for DZA65_RS09475 from Dickeya dianthicola ME23

response regulator transcription factor
SEED: Hypothetical response regulatory protein ypdB
KEGG: two-component system, LytT family, response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	DZA65_RS21430		tRNA (uridine(54)-C5)-methyltransferase TrmA	no	0.57
2	DZA65_RS09465		nucleoid-associated protein YejK	no	0.54
3	DZA65_RS18820		hypothetical protein	no	0.53
4	DZA65_RS05370		GNAT family N-acetyltransferase	no	0.50
5	DZA65_RS20780		hypothetical protein	no	0.49
6	DZA65_RS02710		outer membrane beta-barrel protein	no	0.49
7	DZA65_RS21080		DNA helicase II	no	0.48
8	DZA65_RS05260		DUF2884 domain-containing protein	no	0.47
9	DZA65_RS04685		hypothetical protein	no	0.47
10	DZA65_RS13800		RpiB/LacA/LacB family sugar-phosphate isomerase	0.19	0.47
11	DZA65_RS16125		YccF domain-containing protein	no	0.46
12	DZA65_RS01865		HAMP domain-containing protein	no	0.46
13	DZA65_RS08485		TetR/AcrR family transcriptional regulator	no	0.45
14	DZA65_RS08320		ABC transporter substrate-binding protein	no	0.45
15	DZA65_RS10785		DNA topoisomerase III	no	0.45
16	DZA65_RS22005		inorganic phosphate transporter PitA	no	0.44
17	DZA65_RS21165		adenylosuccinate lyase	no	0.44
18	DZA65_RS02900		pirin family protein	no	0.44
19	DZA65_RS18620		tRNA dihydrouridine(20/20a) synthase DusA	0.48	0.43
20	DZA65_RS19315		bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	no	0.42

Or look for negative cofitness