Top cofit genes for DZA65_RS09350 from Dickeya dianthicola ME23

helix-turn-helix domain-containing protein
SEED: transcriptional regulator, AraC family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	DZA65_RS08765		DUF2971 domain-containing protein	no	0.49
2	DZA65_RS03140		putative DNA-binding transcriptional regulator	no	0.48
3	DZA65_RS14265		enoyl-CoA hydratase	no	0.48
4	DZA65_RS14110		EmmdR/YeeO family multidrug/toxin efflux MATE transporter	no	0.46
5	DZA65_RS04120		DUF2597 family protein	no	0.45
6	DZA65_RS07695		type VI secretion system tip protein VgrG	0.42	0.43
7	DZA65_RS09725		methionine ABC transporter ATPase	no	0.43
8	DZA65_RS04135		hypothetical protein	no	0.42
9	DZA65_RS21365		YifB family Mg chelatase-like AAA ATPase	no	0.42
10	DZA65_RS05275		YgdI/YgdR family lipoprotein	no	0.42
11	DZA65_RS21690		chemotaxis protein	no	0.41
12	DZA65_RS07545		hypothetical protein	no	0.41
13	DZA65_RS14400		type IV secretion system protein	no	0.41
14	DZA65_RS04305		cytosine permease	no	0.40
15	DZA65_RS11370		Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	no	0.39
16	DZA65_RS12190		response regulator transcription factor	no	0.39
17	DZA65_RS07210		hypothetical protein	no	0.39
18	DZA65_RS19770		amino acid ABC transporter ATP-binding protein	no	0.39
19	DZA65_RS07410		hypothetical protein	no	0.39
20	DZA65_RS13615		PTS glucose transporter subunit IIBC	no	0.39

Or look for negative cofitness