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  • Top cofit genes for DZA65_RS09320 from Dickeya dianthicola ME23

    ABC transporter permease
    SEED: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS03080 site-specific integrase no 0.48
    2 DZA65_RS00040 DUF2623 domain-containing protein no 0.45
    3 DZA65_RS03800 hypothetical protein no 0.44
    4 DZA65_RS11765 L-cystine transporter no 0.42
    5 DZA65_RS15590 isochorismate synthase no 0.41
    6 DZA65_RS22090 sugar ABC transporter permease no 0.39
    7 DZA65_RS12590 phage baseplate assembly protein V no 0.39
    8 DZA65_RS16940 methyltransferase no 0.39
    9 DZA65_RS06490 YpfN family protein no 0.37
    10 DZA65_RS15660 type II secretion system minor pseudopilin GspH no 0.37
    11 DZA65_RS12490 two-component system response regulator NarL no 0.37
    12 DZA65_RS17185 hypoxanthine phosphoribosyltransferase no 0.37
    13 DZA65_RS07015 molybdate ABC transporter permease subunit no 0.36
    14 DZA65_RS04590 efflux RND transporter periplasmic adaptor subunit no 0.36
    15 DZA65_RS12025 EndoU domain-containing protein no 0.35
    16 DZA65_RS05000 hypothetical protein no 0.35
    17 DZA65_RS04045 Dam family site-specific DNA-(adenine-N6)-methyltransferase no 0.35
    18 DZA65_RS05010 TIGR03758 family integrating conjugative element protein no 0.35
    19 DZA65_RS04515 multidrug efflux MFS transporter no 0.35
    20 DZA65_RS05130 hypothetical protein no 0.34

    Or look for negative cofitness